Bulletin of Botanical Research ›› 2026, Vol. 46 ›› Issue (2): 231-245.doi: 10.7525/j.issn.1673-5102.2026.02.004
• Original Paper • Previous Articles Next Articles
Yijiao LIU1,2, Jiqing ZHAO1,2, Jinhuan CHEN1,2(
)
Received:2026-01-07
Online:2026-03-20
Published:2026-04-02
Contact:
Jinhuan CHEN
E-mail:chenjh@bjfu.edu.cn
CLC Number:
Yijiao LIU, Jiqing ZHAO, Jinhuan CHEN. Cloning and Functional Study of the LrMYB64 Gene in Lyciumruthenicum[J]. Bulletin of Botanical Research, 2026, 46(2): 231-245.
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URL: https://bbr.nefu.edu.cn/EN/10.7525/j.issn.1673-5102.2026.02.004
Table 1
Application of the primer sequences
引物名称 Primer name | 引物序列(5′→3′) Primer sequence(5′→3′) | 用途 Application |
|---|---|---|
| LrMYB64-F | ATGAGAAAACCTTGTTGTGATCA | 全长克隆引物序列 |
| LrMYB64-R | TTAAGGAAGTGAGTTGAGATCAGGC | 全长克隆引物序列 |
| 35s-F | GACGCACAATCCCACTATCC | 检测 |
| 35s-R | AATCATCGCAAGACCGGC | 检测 |
| LrMYB64-接头-F | GCGGGTCGACGGTACCATGAGAAAACCTTGTTGTG | 重组引物 |
| LrMYB64-接头-R | TAGACATATGGGTACCTTAAGGAAGTGAGTTGAGAT | 重组引物 |
Table 4
RT-qPCR primers sequence
引物名称 Primer name | 引物序列(5′→3′) Primer sequence(5′→3′) | 引物名称 Primer name | 引物序列(5′→3′) Primer sequence(5′→3′) |
|---|---|---|---|
| Actin-7-F | CTGACGGTGAGGACATTCA | LrDFR-qPCR-F | AGGCTGCAATGGAAGAAGCT |
| Actin-7-R | GAGCATCATCTCCAGCAAAG | LrDFR-qPCR-R | AGCTAGGTGGGAACGTAGGT |
| LrFLS1-qPCR-F | TTGTCACTTGGGCTTGGGTT | LrCHI3-qPCR-F | CAGCAGTGGAAGGGCAAAAC |
| LrFLS1-qPCR-R | AAATCAGGCCTGGGACATGG | LrCHI3-qPCR-R | TGCACCCCATACTGTGAACC |
| LrF3H-qPCR-F | AAGGCATGTGAGGATTGGGG | LrPP2C51-qPCR-F | AGAAAGTCTCGCCACACAGG |
| LrF3H-qPCR-R | CAGTCTTGGACCACTTCCCC | LrPP2C51-qPCR-R | TTCCTCAACCAAGGTGTCGG |
| LrMYB64-qPCR-F | ACATGGTGAAGATTGCTGGAGA | LrGH3.6-like2-qPCR-F | TGTGCTTCGAGTTGCTGGAT |
| LrMYB64-qPCR-R | CTTCCAGCTATTAGGGACCATCT | LrGH3.6-like2-qPCR-R | GCACTGCATTGTTCACTGCA |
Fig.4
Identification of positive plants with OE-LrMYB64 gene of Lycium ruthenicumA. Identificationat the DNA level; B. RT-PCR gel electrophoresis image; C. The relative expression levels of the OE-LrMYB64 lines. ***.Significant difference in the relative gene expression between transgenic plants and wild type at the 0.001 level. WT. Wild lines; OE. Gene-overexpressed lines.
Table 6
Summary of RNA-seq data output and quality for WT and OE-LrMYB64 lines of Lyciumruthenicum
样品 Sample | 过滤后读段数 Clean reads/M | 过滤后碱基数 Clean bases/Gb | GC比例 GC percentage/% | Q30碱基比例 Q30 base percentage/% |
|---|---|---|---|---|
| WT1 | 22.66 | 6.76 | 42.72 | 98.52 |
| WT2 | 26.35 | 7.84 | 42.86 | 98.53 |
| WT3 | 21.44 | 6.38 | 42.72 | 98.68 |
| OE-LrMYB64-2 | 20.84 | 6.22 | 42.34 | 98.39 |
| OE-LrMYB64-6 | 21.21 | 6.33 | 42.47 | 98.47 |
| OE-LrMYB64-7 | 21.12 | 6.30 | 42.50 | 98.54 |
Table 7
Statistics of RNA-seq reads alignment to the Lyciumruthenicum reference genome
样品 Sample | 总读段数 Total reads/M | 比对读段数 Mapped reads/M | 比对率 Mapped ratio/% | 唯一比对读段数 Uniquely mapped reads/M | 唯一比对率 Uniquely mapped ratio/% |
|---|---|---|---|---|---|
| WT1 | 45.32 | 43.26 | 95.46 | 41.91 | 92.47 |
| WT2 | 52.70 | 50.21 | 95.29 | 48.37 | 91.79 |
| WT3 | 42.87 | 40.76 | 95.06 | 39.33 | 91.72 |
| OE-LrMYB64-2 | 41.68 | 39.07 | 93.74 | 37.84 | 90.78 |
| OE-LrMYB64-6 | 42.42 | 39.95 | 94.17 | 38.63 | 91.06 |
| OE-LrMYB64-7 | 42.25 | 40.16 | 95.05 | 38.85 | 91.96 |
Table 8
Differential expression analysis of key genes in the anthocyanin and flavonoid biosynthesis pathways in OE-LrMYB64 lines
基因名称 Gene name | 基因编号 Gene ID | 基因注释 (NR) Gene annotation (NR) | log2(倍数变化) log2(FC) | 校正后P值 FDR | 上下调情况 Regulation |
|---|---|---|---|---|---|
| LrCHS1B | Lr09g000692 | 查尔酮合酶 Chalcone synthase, partial | -4.720 | 1.44×109 | 下调 |
| LrFLS1 | Lr02g004007 | 黄酮醇合酶/黄烷酮3-羟化酶 Flavonol synthase/flavanone 3-hydroxylase | -4.517 | 3.04×1011 | 下调 |
| LrCHS2 | Lr05g000433 | 查尔酮合酶 Chalcone synthase, partial | -4.312 | 5.40×109 | 下调 |
| LrF3'5'H1 | Lr06g000237 | 黄烷酮-3',5'-羟化酶 Flavanone-3'5'-hydroxylase | -3.438 | 2.05×103 | 下调 |
| LrF3H | Lr12g002886 | 黄烷酮-3-羟化酶 Flavanone-3-hydroxylase | -3.429 | 8.58×106 | 下调 |
| LrA3G2XYLT | Lr01g000190 | UDP-糖基转移酶 79B6 UDP-glycosyltransferase 79B6 | -3.739 | 8.96×103 | 下调 |
| LrDFR | Lr12g002988 | 二氢黄酮醇-4-还原酶 Dihydroflavonol-4-reductase | -3.022 | 7.13×105 | 下调 |
| LrANS | Lr04g003932 | 花青素合酶 Anthocyanidin synthase | -2.882 | 8.86×103 | 下调 |
| LrCHI3 | Lr05g000667 | 查尔酮异构酶 Chalcone isomerase | -2.19 | 4.18×1015 | 下调 |
| LrA3G2XYLT-like | Lr10g003569 | 花青素3-O-葡萄糖苷2‴-O-木糖基转移酶样蛋白 Anthocyanidin 3-O-glucoside 2‴-O-xylosyltransferase-like | -2.053 | 9.54×105 | 下调 |
| LrA3GT | Lr08g002945 | 花青素3-O-葡萄糖基转移酶样前体 Anthocyanidin 3-O-glucosyltransferase-like precursor | -1.940 | 1.44×1013 | 下调 |
| LrPAL-like | Lr03g000391 | 苯丙氨酸解氨酶 Phenylalanine ammonia-lyase | -1.889 | 2.52×108 | 下调 |
| LrPAL | Lr03g000392 | 苯丙氨酸解氨酶 Phenylalanine ammonia-lyase | -1.626 | 1.91×1019 | 下调 |
Table 9
Key differentially expressed genes in the plant hormone signaling pathway of OE-LrMYB64 lines
基因名称 Gene name | 基因编号 Gene ID | 基因注释 (NR) Gene annotation (NR) | log2(倍数变化) log2(FC) | 校正后P值 FDR | 上下调情况 Regulation |
|---|---|---|---|---|---|
| LrPR4 | Lr06g004329 | 病程相关叶片蛋白4样蛋白 Pathogenesis-related leaf protein 4-like | 4.450 | 2.81×104 | 上调 |
| LrPP2C51 | Lr03g002599 | 蛋白磷酸酶2C 51 Probable protein phosphatase 2C 51 | 2.627 | 5.85×103 | 上调 |
| LrSAUR36 | Lr06g003114 | 生长素响应蛋白SAUR36样蛋白 Auxin-responsive protein SAUR36-like | 2.325 | 4.14×105 | 上调 |
| LrGH3.6-like2 | Lr01g000120 | 吲哚-3-乙酸-酰胺合成酶GH3.6样蛋白 Indole-3-acetic acid-amido synthetase GH3.6-like | 2.130 | 5.91×1020 | 上调 |
| LrARF9 | Lr09g004091 | 生长素响应因子9样蛋白 Auxin response factor 9-like | 2.080 | 4.36×103 | 上调 |
| LrGH3.6-like1 | Lr01g000121 | 吲哚-3-乙酸-酰胺合成酶GH3.6样蛋白 Indole-3-acetic acid-amido synthetase GH3.6-like | 1.997 | 5.25×108 | 上调 |
| LrGID1B | Lr01g004492 | 赤霉素受体GID1B样蛋白 Gibberellin receptor GID1B-like | 1.733 | 3.00×103 | 上调 |
| LrSAUR50 | Lr09g003793 | 生长素响应蛋白SAUR50样蛋白 Auxin-responsive protein SAUR50-like | 1.526 | 3.26×103 | 上调 |
| LrABF4 | Lr08g001908 | 脱落酸不敏感5样蛋白4 ABSCISIC ACID-INSENSITIVE 5-like protein 4 | 1.287 | 1.07×108 | 上调 |
| LrGH3.6 | Lr01g000122 | 吲哚-3-乙酸-酰胺合成酶GH3.6样蛋白 Indole-3-acetic acid-amido synthetase GH3.6-like | 1.245 | 1.63×1011 | 上调 |
| LrIAA26 | Lr03g004407 | 生长素响应蛋白IAA26 Auxin-responsive protein IAA26 | 1.155 | 1.50×106 | 上调 |
| LrARF5 | Lr02g005512 | 生长素响应因子5 Auxin response factor 5 | 1.096 | 8.88×109 | 上调 |
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