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植物研究 ›› 2007, Vol. 27 ›› Issue (1): 68-72.doi: 10.7525/j.issn.1673-5102.2007.01.013

• 论文 • 上一篇    下一篇

濒危植物夏蜡梅ISSR扩增条件的优化

金则新;李钧敏   

  1. (台州学院生态研究所,临海 317000)
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2007-01-20 发布日期:2007-01-20
  • 通讯作者: 金则新
  • 基金资助:
     

Optimization of ISSR Amplification Conditions in Endangered Plant Sinocalycanthus chinensis

JIN Ze-Xin;LI Jun-Min   

  1. (Institute of Ecology, TaiZhou University, Linhai 317000)
  • Received:1900-01-01 Revised:1900-01-01 Online:2007-01-20 Published:2007-01-20
  • Contact: JIN Ze-Xin
  • Supported by:
     

摘要: 为了确保ISSR分析结果的可靠性和重复性,有必要进行ISSR-PCR反应体系的优化。以濒危植物夏蜡梅的基因组DNA为研究对象,利用单因素试验,测试了ISSR-PCR反应体系中镁离子,dNTP,模板DNA含量,Taq DNA聚合酶量、BSA浓度、引物浓度、甘油浓度等7种因素对反应结果的影响,经过优化实验,建立了夏蜡梅ISSR-PCR最佳反应体系:10 μL PCR反应体积,1×Taq酶配套缓冲液(10 mmol·L-1 Tris·HCl pH9.0,50 mmol·L-1 KCl, 0.1%Triton X-100),1.5 mmol·L-1 MgCl2,0.75U Taq酶(上海华美公司),20 ng模板DNA,6pmol引物(上海Sangon公司);dATP、dCTP 、dGTP 、dTTP 各0.15 mmol·L-1。利用优化反应体系从100个ISSR引物中共筛选出12个稳定性好、重复性高的引物,对10个居群共200个夏蜡梅个体的DNA进行扩增,共扩增出156个条带,其中多态条带为114个,总的多态位点百分率为73.08%。各居群的多态位点百分率有较大差异,平均为23.65%。夏蜡梅ISSR反应体系的建立为利用ISSR分子标记技术研究夏蜡梅的遗传多样性奠定了良好的基础。

关键词: 夏蜡梅, ISSR, 优化, 遗传多样性

Abstract: It was necessary to optimize the ISSR amplification conditions to ensure the replication and stability in the PCR amplification. The ISSR amplification conditions of endangered plant Sinocalycanthus chinensis was optimized and the effect of 7 factors such as Mg2+ concentration, dNTP concentration, DNA templates dosage, Taq DNA polymerase dosage, BSA concentration, primer dosage and glycerol concentration on ISSR amplification were tested using single factor method. The optimal amplification conditions of ISSR for Sinocalycanthus chinensis were determined as follows: 1 Taq polymerase corresponding buffer (10 mmol·L-1 Tris·HCl pH9.0,50 mmol·L-1 KCl, 0.1%Triton X-100), 1.5 mmol·L-1 MgCl2, 0.75U Taq DNA polymerase, 20 ng template DNA, 6 pmol primer, 0.15 mmol·L-1 dATP, dCTP, dGTP, dTTP for each in total 10 μL reaction volume. Using these optimal amplification conditions, 12 stable and repeatable ISSR primers were selected from total 100 primers. 156 loci were produced in total 10 Sinocalycanthus chinensis populations with 200 individuals. There were 114 polymorphic loci among them and the total polymorphic loci percentage was 73.08%. The polymorphic loci percentage in every population was quite different with a mean of 23.65%. The establishment of the PCR reaction conditions could settle favorable basis for the further study on the genetic diversity of Sinocalycanthus chinensis using ISSR molecular marker techniques.

Key words: Sinocalycanthus chinensis, ISSR, optimization, genetic diversity

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