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植物研究 ›› 2014, Vol. 34 ›› Issue (1): 68-74.doi: 10.7525/j.issn.1673-5102.2014.01.010

• 论文 • 上一篇    下一篇

番茄SlDP1基因的克隆、生物信息学及表达特性分析

杜利欣;胡宗利;张建苓;陈国平*   

  1. 重庆大学生物工程学院,重庆 400044
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2014-01-20 发布日期:2014-01-20
  • 通讯作者: 陈国平
  • 基金资助:
     

Cloning, Bioinformatics and Expression Analysis of SlDP1 Gene in Tomato

DU Li-Xin;HU Zong-Li;ZHANG Jian-Ling;CHEN Guo-Ping*   

  1. College of Bioengineering,Chongqing University,Chongqing 400044
  • Received:1900-01-01 Revised:1900-01-01 Online:2014-01-20 Published:2014-01-20
  • Contact: CHEN Guo-Ping
  • Supported by:
     

摘要: DP基因属于DP/E2F转录因子家族,其编码的蛋白是E2F蛋白的二聚化分子伴侣,可能参与调控细胞周期、DNA复制、生长、分化、凋亡等多种细胞进程。根据SGN数据库登录的番茄序列,通过RT-PCR方法从野生型番茄中克隆了一个DP基因,命名为SlDP1。生物信息学预测,SlDP1蛋白定位于细胞核,具有保守的DNA结合域、二聚化区域和C-末端及多个磷酸化位点。蛋白质二级结构预测SlDP1蛋白含51.50%的环状结构,34.55%的α螺旋和2.66%的β折叠。荧光定量PCR分析外源激素对野生型番茄SlDP1基因表达量的影响,发现该基因受外源性乙烯前体ACC的诱导。对环境因子应答的RT-PCR结果表明,在伤害和盐处理的叶中该基因表达不受诱导,而盐处理的根中该基因表达量提高。SlDP1基因表达模式分析表明,该基因在根、花、萼片及成熟时期果实中表达量较高。这些结果为进一步研究SlDP1基因在番茄生长发育过程的功能奠定了基础。

关键词: SlDP1基因, 生物信息学分析研究, 表达模式, 激素处理, 非生物环境胁迫

Abstract: DP gene belonging to DP/E2F transcription family, encodes a dimeric chaperonin of E2F protein, which is essential for regulating cell cycle, DNA replication, growth, differentiation and apoptosis. According to sequence registered in SNG database, a DP gene was cloned using RT-PCR, and named as SlDP1 gene. SlDP1 protein is located in nucleus, contains conserved DNA-binding domain, dimerization domain, C-terminal domain and multiple phosphorylation sites. SlDP1 protein has 51.50% loop, 34.02% α-helixes and 11.87% β-strands. Exogenous hormone analysis manifested that SlDP1 gene was induced by ethylene precursor ACC. Results of abiotic environment response indicated that SlDP1 gene was not induced in leaves under wound and salt stress, but was apparently induced in salt-stress root. The expression pattern analysis revealed that expression of SlDP1 gene was stronger in flower, sepal and mature fruits. Taken together, our data establish a good foundation for studying the biological functions of SlDP1 gene in tomato life cycle.

Key words: SlDP1 gene, bioinformatics, expression pattern, hormone, abiotic environment stress

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